YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-93
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	241	0.99
Transmembrane Helix	242	262	0.91
Non-Cytoplasmic	263	277	0.81
Transmembrane Helix	278	297	0.89
Cytoplasmic	298	303	0.67
Transmembrane Helix	304	320	0.96
Non-Cytoplasmic	321	327	0.76
Transmembrane Helix	328	350	0.91
Cytoplasmic	351	367	0.95
Transmembrane Helix	368	390	0.86
Non-Cytoplasmic	391	443	0.93
Transmembrane Helix	444	466	0.93
Cytoplasmic	467	485	0.94
Transmembrane Helix	486	508	0.78
Non-Cytoplasmic	509	527	0.73
Transmembrane Helix	528	550	0.89
Cytoplasmic	551	560	0.75
Transmembrane Helix	561	581	0.93
Non-Cytoplasmic	582	587	0.84
Transmembrane Helix	588	614	0.73
Cytoplasmic	615	626	0.79
Transmembrane Helix	627	645	0.81
Non-Cytoplasmic	646	648	0.69
Transmembrane Helix	649	671	0.86
Cytoplasmic	672	700	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSNTWDLV GEQQQRKKSR SPSRASRVDS ELLVGVENAA ELEALGLGKE QLEEEARRHK  60
   61 KQRSKSPALE NIRKTSIHLL QKFGAIPKKK DDSVLLFRFH DIPDIPLESL CIRPKEFFEE 120
  121 PKVFSFRDMG REQQKAEVNE KCSYLFRGTS FDHDDHFELP TETGRVPEYD HFCPIHGSRR 180
  181 RLPRNKLVTM QTLMHSVDDE DNEDLAYIYG HDFLAKLVRK KKREMMSGTE KERANKIKRK 240
  241 IMSNLWILSV AFLFLFTAFN GLQNLQTSVN GDLGSDSLVA LYLSLAISSL FVPSFMINRL 300
  301 GCKLTFLIAI FVYFLYIVIN LRPTYSSMIP ASIFCGIAAS CIWGAKCAYI TEMGIRYASL 360
  361 NFESQTTVIV RFFGYFFMIV HCGQVVGNMV SSYIFTLSYS QALRGPEDSI YDSCGYQFPK 420
  421 NLSDLTELAE SNLARPPQKV YVAVCLAYLA CVIISGMIMS MFLNALAKDA RNRKMAQKFN 480
  481 SEIFYLMLKH LINIKFMLLV PLTIFNGLEQ AFLVGVYTKA FVGCGLGIWQ IGFVMACFGI 540
  541 SDAVCSLVFG PLIKLFGRMP LFVFGAVVNL LMIVTLMVWP LNAADTQIFY VVAAMWGMAD 600
  601 GVWNTQINGF WVALVGRQSL QFAFTKYRFW ESLGIAIGFA LIRHVTVEIY LLITFFMLLL 660
  661 GMCGFLAIEN FDHIIKFWHH LIHTSCPEKE PLDDRNSDFE