YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20939, gi\|99492
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASAIQSS SLAGQTLLRP QQNELVKKVG TAQARITMRR TVRSAPESIW YGPDRPKYLG  60
   61 PFSEGTPSYL TGEFPGDYGW DTAGLSADPE TFAKNRELEV IHCRWAMLGA LGCLFPELLA 120
  121 KNGVKFGEAV WFKAGAQIFS EGGLDYLGNP NLIHAQSILA IWACQVVLMG LIEGYRVGGG 180
  181 PLGEGLDPLY PGGAFDPLGL ADDPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPI 240
  241 ENLYDHLADP VANNAWAYAT NFVPGK

Type	Start	End	Confidence
Cytoplasmic	1	100	0.70
Transmembrane Helix	101	120	0.58
Non-Cytoplasmic	121	151	0.88
Transmembrane Helix	152	172	0.60
Cytoplasmic	173	219	0.67
Transmembrane Helix	220	235	0.45
Non-Cytoplasmic	236	266	0.69