YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2148056
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.62
Transmembrane Helix	26	48	0.87
Non-Cytoplasmic	49	53	0.50
Transmembrane Helix	54	76	0.67
Cytoplasmic	77	78	0.47
Transmembrane Helix	79	98	0.74
Non-Cytoplasmic	99	104	0.66
Transmembrane Helix	105	126	0.88
Cytoplasmic	127	140	0.88
Transmembrane Helix	141	160	0.86
Non-Cytoplasmic	161	176	0.65
Transmembrane Helix	177	201	0.83
Cytoplasmic	202	207	0.68
Transmembrane Helix	208	227	0.89
Non-Cytoplasmic	228	273	0.95
Transmembrane Helix	274	293	0.92
Cytoplasmic	294	311	0.83
Transmembrane Helix	312	330	0.89
Non-Cytoplasmic	331	382	0.92
Transmembrane Helix	383	405	0.89
Cytoplasmic	406	422	0.92
Transmembrane Helix	423	444	0.92
Non-Cytoplasmic	445	455	0.85
Transmembrane Helix	456	477	0.90
Cytoplasmic	478	484	0.87
Transmembrane Helix	485	506	0.90
Non-Cytoplasmic	507	525	0.91
Transmembrane Helix	526	548	0.92
Cytoplasmic	549	639	0.99
Transmembrane Helix	640	662	0.90
Non-Cytoplasmic	663	664	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSTLSPPA TDTAEPLQAY ERIRNAADIS VIVIYFVVVM AVGLWHMFST NRGTVGGFFL  60
   61 AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAAAGIATGG FEWNALILVV LLGWVFVPIY 120
  121 IKAGVVTMPE YLRKRFGGQR IQVYLSVLSL VLYIFTKISA DIFSGAIFIN LALGLDLYLA 180
  181 IFILLAITAL YTITGGLAAV IYTDTLQTVI MLLGSFILTG FAFHEVGGYS AFVTKYMNAI 240
  241 PTVTSYGNTT VKKECYTPRA DSFHIFRDPL KGDLPWPGLI FGLTIISLWY WCTDQVIVQR 300
  301 CLSAKNMSHV KAGCIMCGYM KLLPMFLMVM PGMISRILFT EKVACTVPSE CEKYCGTKVG 360
  361 CTNIAYPTLV VELMPNGLRG LMLSVMLASL MSSLTSIFNS ASTLFTMDIY TKIRKKASEK 420
  421 ELMIAGRLFM LVLIGVSIAW VPIVQSAQSG QLFDYIQSIT SYLGPPIAAV FLLAIFCKRV 480
  481 NEPGAFWGLI IGFLIGVSRM ITEFAYGTGS CMEPSNCPTI ICGVHYLYFA IILFVITIIV 540
  541 ILAISLFTKP IADVHLYRLC WSLRNSKEER IDLDAEDEDI QDAREDALEI DTEASEEKKG 600
  601 CLRQAYDMFC GLDQQKGPKM TKEEEAAMKL KMTDTSEKRL WRMVVNINGI ILLAVAVFCH 660
  661 AYFA