YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11277251
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.66
Transmembrane Helix	7	25	0.94
Cytoplasmic	26	35	0.62
Transmembrane Helix	36	58	0.83
Non-Cytoplasmic	59	66	0.63
Transmembrane Helix	67	86	0.76
Cytoplasmic	87	94	0.44
Transmembrane Helix	95	120	0.81
Non-Cytoplasmic	121	154	0.66
Transmembrane Helix	155	181	0.85
Cytoplasmic	182	220	0.93
Transmembrane Helix	221	239	0.84
Non-Cytoplasmic	240	249	0.73
Transmembrane Helix	250	268	0.86
Cytoplasmic	269	278	0.69
Transmembrane Helix	279	301	0.84
Non-Cytoplasmic	302	310	0.64
Transmembrane Helix	311	333	0.88
Cytoplasmic	334	339	0.77
Transmembrane Helix	340	360	0.89
Non-Cytoplasmic	361	375	0.74
Transmembrane Helix	376	402	0.83
Cytoplasmic	403	404	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWEFNSYYT LIAATLVLLV GKFLVQKIKF LRDFNIPEPV AGGLIAAIVL FALHEAYGVS  60
   61 FKFEKPLQNA FMLIFFTSIG LSADFSRLKA GGLPLVVFTA IVGGFILVQN FVGVGLATAL 120
  121 GLDPLIGLIT GSVSLTGGHG TSGAWGPNFE TQYGLVGATG LGIASATFGL VFGGLIGGPV 180
  181 ARRLINKMGR KPVENKKQDQ DDNADDVFEQ AKRTRLITAE SAVETLAMFA ACLAFAEIMD 240
  241 GFDKEYLFDL PKFVWCLFGG VVIRNILTAA FKVNMFDRAI DVFGNASLSL FLAMALLNLK 300
  301 LWELTGLAGP VTVILAVQTV VMVLYATFVT YVFMGRDYDA AVLAAGHCGF GLGATPTAVA 360
  361 NMQSVTHTFG ASHKAFLIVP MVGAFFVDLI NAAILTGFVN FFKG