YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|786136
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFPFLFIF PFLLKLCECS DLNPLDPLAQ QSGGDSNNNE GNNGDSTGSS DLTQVDTESN  60
   61 DDSSSSETSQ QPQQPPDQPV DQQQPVQQPS QDQPSGPDSQ DQPVDHQQPT QPDQPEDQQG 120
  121 QQQQPLDQPT GQPGPLEPVD QQQQPQPQPQ PQPEPQPDQP EDQQGQQQQP LDQPTGQQGQ 180
  181 QPPIQPVDQQ QPVQEPAKDD PTGQQQQPQP EPEPEPEQTP ETPPQQEQPT PDDHPSGQQP 240
  241 QDEPVQGQGA QDSPTPDDQP VDQQQPVHEP VQDQTQPQQP QPQPEPQPEP EPGQQPPVQP 300
  301 VDQQQPVQDQ PSGKETPQPT QDDQQVQEPT EQKPEPEQTP EHSPSKDDLS GEELVKPSEG 360
  361 HMTGAAADGS GQPPDKKPDD DSKGKDGSKS DSGTPIKDKK HSKHTPSHGC GQFFTNTHQV 420
  421 TVIFHWWLCE KPWQYALTLL TLFGFALLSP CLKAYREVLR AKAVRSFIFD CLLTHLFLFL 480
  481 IALCAYALDF LLMLVVMTFN VGVFFAVILG YSVGYVLSSL AYSTLRTQPN RSNSFSRINE 540
  541 DCC

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	432	0.99
Transmembrane Helix	433	455	0.89
Cytoplasmic	456	470	0.82
Transmembrane Helix	471	490	0.90
Non-Cytoplasmic	491	500	0.60
Transmembrane Helix	501	522	0.87
Cytoplasmic	523	543	0.93