YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145567
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNEGSVPT EGIDYGDTMV VWPSTGRIPG GDVKPGGSSG LAPSMPPGWG DYSPQGIALV  60
   61 QSVLFPGIIR RIILDKELEE GDWSGWSVSV HSPWGNEKVS AARTVLENGL RGGLPEPSRP 120
  121 AAVSFARLEP ASGNEQKIIR LMVTQQLEQV TDIPASQLPA AGNNVPVKYR LTDLMQNGTQ 180
  181 YMAIIGGIPM TVPVVDAVPV PDRSRPGTNI KDVYSAPVSP NLPDLVLSVG QMNTPVRSNP 240
  241 EIQEDGVISE TGNYVEAGYT MSSNNHDVIV RFPEGSGVSP LYISAVEILD SNSLSQRQEA 300
  301 ENNAKDDFRV KKEQENDEKT VLTKTSEVII SVGDKVGEYL GDKYKALSRE IAENINNFQG 360
  361 KTIRSYDDAM SSINKLMANP SLKINATDKE AIVNAWKAFN AEDMGNKFAA LGKTFKAADY 420
  421 AIKANNIREK SIEGYQTGNW GPLMLEVESW VISGMASAVA LSLFSLTLGS ALIAFGLSAT 480
  481 VVGFVGVVIA GAIGAFIDDK FVDELNHKII K

Type	Start	End	Confidence
Non-Cytoplasmic	1	448	0.53
Transmembrane Helix	449	469	0.77
Cytoplasmic	470	470	0.28
Transmembrane Helix	471	497	0.82
Non-Cytoplasmic	498	511	0.40