YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1083746, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGTPAANWS VELDLGSGVP PGEEGNRTAG PPQRNEALAR VEVAVLCLIL FLALSGNACV  60
   61 LLALRTTRHK HSRLFFFMKH LSIRDLVVAV FQVLPQLLWD ITFRFYGPDL LCRLVKYLQV 120
  121 VGMFASTYLL LLMSLDRCLA ICQPLRSLRR RTDRLAVLGT WLGCLVASAP QVHIFSLREV 180
  181 ADGVFDCWAV FIQPWGPKAY VTWITLAVYI VPVIVLAACY GLISFKIWQN LRLKTAAAAA 240
  241 AAEGNDAAGG AGRAALARVS SVKLISKAKI RTVKMTFIIV LAFIVCWTPF FFVQMWSVWD 300
  301 VNAPKEASAF IIAMLLASLN SCCNPWIYML FTGHLFHELV QRFFCCSARY LKGSRPGETS 360
  361 VSKKSNSSTF VLSRRSSSQR SCSQPSSA

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.92
Transmembrane Helix	41	64	0.88
Cytoplasmic	65	80	0.85
Transmembrane Helix	81	99	0.87
Non-Cytoplasmic	100	116	0.79
Transmembrane Helix	117	135	0.90
Cytoplasmic	136	154	0.83
Transmembrane Helix	155	175	0.94
Non-Cytoplasmic	176	200	0.95
Transmembrane Helix	201	224	0.92
Cytoplasmic	225	272	0.97
Transmembrane Helix	273	293	0.91
Non-Cytoplasmic	294	308	0.81
Transmembrane Helix	309	330	0.91
Cytoplasmic	331	388	0.97