YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170962
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNAQVKTP LPPAPAPKKE SNFLIDFLMG GVSAAVAKTA ASPIERVKLL IQNQDEMIKQ  60
   61 GTLDKKYSGI VDCFKRTAKQ EGLISFWRGN TANVIRYFPT QALNFAFKDK IKLMFGFKKE 120
  121 EGYGKWFAGN LASGGAAGAL SLLFVYSLDY ARTRLAADSK SSKKGGARQF NGLIDVYKKT 180
  181 LKSDGVAGLY RGFLPSVVGI VVYRGLYFGM YDSLKPLLLT GSLEGSFLAS FLLGWVVTTG 240
  241 ASTCSYPLDT VRRRMMMTSG QAVKYDGAFD CLRKIVAAEG VGSLFKGCGA NILRGVAGAG 300
  301 VISMYDQLQM ILFGKKFK

Type	Start	End	Confidence
Cytoplasmic	1	22	0.71
Transmembrane Helix	23	41	0.36
Non-Cytoplasmic	42	125	0.57
Transmembrane Helix	126	146	0.71
Cytoplasmic	147	186	0.80
Transmembrane Helix	187	207	0.84
Non-Cytoplasmic	208	226	0.82
Transmembrane Helix	227	248	0.90
Cytoplasmic	249	318	0.81