YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMA3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.94
Transmembrane Helix	64	85	0.85
Non-Cytoplasmic	86	93	0.80
Transmembrane Helix	94	113	0.67
Cytoplasmic	114	241	0.81
Transmembrane Helix	242	263	0.90
Non-Cytoplasmic	264	277	0.68
Transmembrane Helix	278	301	0.88
Cytoplasmic	302	645	0.79
Transmembrane Helix	646	667	0.94
Non-Cytoplasmic	668	671	0.83
Transmembrane Helix	672	692	0.86
Cytoplasmic	693	709	0.94
Transmembrane Helix	710	733	0.92
Non-Cytoplasmic	734	754	0.94
Transmembrane Helix	755	773	0.91
Cytoplasmic	774	784	0.81
Transmembrane Helix	785	806	0.93
Non-Cytoplasmic	807	815	0.83
Transmembrane Helix	816	835	0.91
Cytoplasmic	836	949	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGLEDIVN ENVDLEKIPI EEVFQQLKCS REGLSGAEGE NRLQIFGPNK LEEKKESKLL  60
   61 KFLGFMWNPL SWVMEAAAIM AIALANGGGK PPDWQDFVGI VCLLVINSTI SFVEENNAGN 120
  121 AAAALMAGLA PKTKVLRDGK WSEQEASILV PGDIVSIKLG DIIPADARLL EGDPLKVDQS 180
  181 ALTGESLPAT KGPGEEVFSG STCKQGEIEA VVIATGVHTF FGKAAHLVDS TNQVGHFQKV 240
  241 LTAIGNFCIC SIAVGIAIEI VVMYPIQRRH YRDGIDNLLV LLIGGIPIAM PTVLSVTMAI 300
  301 GSHKLSQQGA ITKRMTAIEE MAGMDVLCSD KTGTLTLNKL SVDKNLIEVY CKGVEKDEVL 360
  361 LFAARASRVE NQDAIDAAMV GMLADPKEAR AGIREIHFLP FNPVDKRTAL TFIDSNGNWH 420
  421 RVSKGAPEQI LDLCNARADL RKRVHSTIDK YAERGLRSLA VSRQTVPEKT KESSGSPWEF 480
  481 VGVLPLFDPP RHDSAETIRR ALDLGVNVKM ITGDQLAIAK ETGRRLGMGS NMYPSSSLLG 540
  541 KHKDEAMAHI PVEDLIEKAD GFAGVFPEHK YEIVKKLQER KHICGMTGDG VNDAPALKKA 600
  601 DIGIAVADAT DAARGASDIV LTEPGLSVII SAVLTSRAIF QRMKNYTIYA VSITIRIVFG 660
  661 FMLIALIWKF DFSPFMVLII AILNDGTIMT ISKDRVKPSP TPDSWKLKEI FATGVVLGGY 720
  721 MAIMTVVFFW AAYKTDFFPR TFHVRDLRGS EHEMMSALYL QVSIVSQALI FVTRSRSWSF 780
  781 TERPGYFLLI AFWVAQLIAT AIAVYGNWEF ARIKGIGWGW AGVIWLYSIV FYFPLDIMKF 840
  841 AIRYILAGTA WKNIIDNRTA FTTKQNYGIE EREAQWAHAQ RTLHGLQNTE TANVVPERGG 900
  901 YRELSEIANQ AKRRAEIARL RELHTLKGHV ESVVKLKGLD IETAGHYTV