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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYEC_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGMKLSFPP ESPPLSVIVA LSLSASPVTI DSSAAATTVP SFVFSDGRKL NGATVLLRYV  60
   61 GRSAKKLPDF YGNNAFDSSQ IDEWVDYASV FSSGSEFENA CGRVDKYLES STFLVGHSLS 120
  121 IADVAIWSAL AGTGQRWESL RKSKKYQSLV RWFNSILDEY SEVLNKVLAT YVKKGSGKPV 180
  181 AAPKSKDSQQ AVKGDGQDKG KPEVDLPEAE IGKVKLRFAP EPSGYLHIGH AKAALLNKYF 240
  241 AERYQGEVIV RFDDTNPAKE SNEFVDNLVK DIGTLGIKYE KVTYTSDYFP ELMDMAEKLM 300
  301 REGKAYVDDT PREQMQKERM DGIDSKCRNH SVEENLKLWK EMIAGSERGL QCCVRGKFNM 360
  361 QDPNKAMRDP VYYRCNPMSH HRIGDKYKIY PTYDFACPFV DSLEGITHAL RSSEYHDRNA 420
  421 QYFKVLEDMG LRQVQLYEFS RLNLVFTLLS KRKLLWFVQT GLVDGWDDPR FPTVQGIVRR 480
  481 GLKIEALIQF ILEQGASKNL NLMEWDKLWS INKRIIDPVC PRHTAVVAER RVLFTLTDGP 540
  541 DEPFVRMIPK HKKFEGAGEK ATTFTKSIWL EEADASAISV GEEVTLMDWG NAIVKEITKD 600
  601 EEGRVTALSG VLNLQGSVKT TKLKLTWLPD TNELVNLTLT EFDYLITKKK LEDDDEVADF 660
  661 VNPNTKKETL ALGDSNMRNL KCGDVIQLER KGYFRCDVPF VKSSKPIVLF SIPDGRAAK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle