YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|493068
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRIADSLF AFTGPQQCLP RVPKLAASSA RVSPGVYAVK PIDLLLKGRT HRSRRCVAPV  60
   61 KRRIGCIKAV AAPVAPPSAD SAEDREQLAE SYGFRQIGED LPENVTLKDI MDTLPKEVFE 120
  121 IDDLKALKSV LISVTSYTLG LFMIAKSPWY LLPLAWAWTG TAITGFFVIG HDCAHKSFSK 180
  181 NKLVEDIVGT LAFLPLVYPY EPWRFKHDRH HAKTNMLVHD TAWQPVPPEE FESSPVMRKA 240
  241 IIFGYGPIRP WLSIAHWVNW HFNLKKFRAS EVNRVKISLA CVFAFMAVGW PLIVYKVGIL 300
  301 GWVKFWLMPW LGYHFWMSTF TMVHHTAPHI PFKPADEWNA AQAQLNGTVH CDYPSWIEIL 360
  361 CHDINVHIPH HISPRIPSYN LRAAHESIQE NWGKYTNLAT WNWRLMKTIM TVCHVYDK

Type	Start	End	Confidence
Cytoplasmic	1	125	0.93
Transmembrane Helix	126	145	0.77
Non-Cytoplasmic	146	153	0.62
Transmembrane Helix	154	174	0.86
Cytoplasmic	175	274	0.76
Transmembrane Helix	275	294	0.93
Non-Cytoplasmic	295	305	0.69
Transmembrane Helix	306	327	0.78
Cytoplasmic	328	418	0.95