YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13503, gi\|100761
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMSRLSLTD MKGRNRILAH MKIKPTRRFL TMPPAPIPYN NHESYCGVQI LLKISRYLNE  60
   61 TGRPLPSYNA HRDFRAEVLG PRLDNGESFS GILQGINNAN GIGNTPLGQD IRDLYAEWER 120
  121 TGELLIPSPL DQFGIHPILD LNIGNFYLSF TNLSLFMLLT LGLVLLLVFV VTKKGGGKLV 180
  181 PNAWQSLVEL IYDFVLNLVN EQIGGLSGNV KQKFFPCILV TFTFLLFCNL QGMIPFSFTV 240
  241 TSHFLITLAL SFSIFIGITI VGFQRHGLHF FSFLLPAGVP LPLAPFLVLL ELISYCFRAL 300
  301 SLGIRLFANM MAGHSLVKIL SGFAWTMLFL NNIFYFIGDL GPLFIVLALT GLELGVAILQ 360
  361 AYVFTILICI YLNDAINLH

Type	Start	End	Confidence
Cytoplasmic	1	147	0.75
Transmembrane Helix	148	171	0.85
Non-Cytoplasmic	172	213	0.70
Transmembrane Helix	214	234	0.87
Cytoplasmic	235	242	0.61
Transmembrane Helix	243	263	0.93
Non-Cytoplasmic	264	272	0.65
Transmembrane Helix	273	297	0.78
Cytoplasmic	298	314	0.60
Transmembrane Helix	315	337	0.80
Non-Cytoplasmic	338	343	0.65
Transmembrane Helix	344	372	0.76
Cytoplasmic	373	379	0.73