YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20160836, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFDHNHVVI MGLNQRDSIW KLLNDYNVNS LKRRRQAEID AFFEPFERAQ RIRFNNWQNG  60
   61 IELLDGAEWR NGDIVIPGGG GPVISSPLDQ FFIDPLFGLD MGNFYLSFTN ESLSMAVTVV 120
  121 LVPSLFGVVT KKGGGKSVPN AWQSLVELIY DFVLNLVNEQ IGGNVKQKFF PRISVTFTFS 180
  181 LFRNPQGMIP FSFTVTSHFL ITLALSFSIF IGITIVGFQR HGLHFFSFLL PAGVPLPLAP 240
  241 FLVLLELISH CFRALSSGIR LFANMMAGHS SVKILSGFAW TMLFLNNIFY FIGDLGPLFI 300
  301 VLALTGLELG VAILQAHVST ISICIYLNDA INLHQNE

Type	Start	End	Confidence
Cytoplasmic	1	194	0.75
Transmembrane Helix	195	216	0.90
Non-Cytoplasmic	217	227	0.67
Transmembrane Helix	228	248	0.86
Cytoplasmic	249	268	0.64
Transmembrane Helix	269	292	0.74
Non-Cytoplasmic	293	297	0.56
Transmembrane Helix	298	318	0.78
Cytoplasmic	319	337	0.75