YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|563548, gi\|10...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHNFHAFPG RTKPTIFFPE KSFCFFRARR GTIRRFFIMI NYVLQSMKVT ASSSSSGISF  60
   61 PFVLEIVGTP LPGDSFTNRL TASTVSIPGY IVDPKIISSL THFNRLLVDL KYDFLEGRMY 120
  121 PKYIFSLQQQ LDNTPIESLG KKLDSMRQDE LTGLSDYLQS LGYSDQAYLE YLKICDERYR 180
  181 DMVVPSPLEQ FSILPLIPMK IGNLYFSFTN SSLFMLLTLS LVLLLNHFVT KKGGGNLVPN 240
  241 AWQSLVELIY DFVLNLVNEQ IGGLSGNVKQ KFFPCILVTF TFLLFCNLQG MIPYSFTVTS 300
  301 HFLITLGLSF SIFIGITIVG FQRNGLHFLS FLLPAGVPLP LAPFLVLLEL ISYCFRALSL 360
  361 GIRLFANMMA GHSLVKILSG FAWTMLCMND LLYFIGDLGP LFIVLALTGL ELGVAILQAY 420
  421 VFTILICIYL NDAINLH

Type	Start	End	Confidence
Cytoplasmic	1	203	0.80
Transmembrane Helix	204	228	0.83
Non-Cytoplasmic	229	271	0.77
Transmembrane Helix	272	291	0.90
Cytoplasmic	292	300	0.61
Transmembrane Helix	301	321	0.93
Non-Cytoplasmic	322	330	0.68
Transmembrane Helix	331	355	0.78
Cytoplasmic	356	371	0.58
Transmembrane Helix	372	394	0.76
Non-Cytoplasmic	395	401	0.64
Transmembrane Helix	402	430	0.77
Cytoplasmic	431	437	0.75