YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7436046, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.61
Transmembrane Helix	8	27	0.75
Cytoplasmic	28	89	0.86
Transmembrane Helix	90	109	0.93
Non-Cytoplasmic	110	137	0.76
Transmembrane Helix	138	159	0.85
Cytoplasmic	160	178	0.84
Transmembrane Helix	179	204	0.87
Non-Cytoplasmic	205	220	0.76
Transmembrane Helix	221	240	0.81
Cytoplasmic	241	289	0.81
Transmembrane Helix	290	312	0.80
Non-Cytoplasmic	313	319	0.61
Transmembrane Helix	320	341	0.92
Cytoplasmic	342	359	0.69
Transmembrane Helix	360	380	0.92
Non-Cytoplasmic	381	396	0.65
Transmembrane Helix	397	417	0.93
Cytoplasmic	418	447	0.63
Transmembrane Helix	448	469	0.74
Non-Cytoplasmic	470	470	0.26
Transmembrane Helix	471	498	0.66
Cytoplasmic	499	533	0.51
Transmembrane Helix	534	560	0.79
Non-Cytoplasmic	561	564	0.52
Transmembrane Helix	565	586	0.87
Cytoplasmic	587	641	0.54
Transmembrane Helix	642	660	0.78
Non-Cytoplasmic	661	661	0.23
Transmembrane Helix	662	676	0.56
Cytoplasmic	677	733	0.58
Transmembrane Helix	734	757	0.76
Non-Cytoplasmic	758	761	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISDLATEIF IPVCAVIGYI SCYQWFLVSK VKVSTDRHVN NGGSAKNGFN DYLIEEEEGV  60
   61 NDQNVVAKCA EIQNAISEGA TSFLFTEYQY VGVFMCAFAV LIFVFLGSVE GFSTESQPCT 120
  121 YSPLKKCKPA LATALFSTVS FLLGAITSVV SGFLGMKIAT DANARTTLEA RKGVGKAFII 180
  181 AFRSGAVMGF LLAANGLLVL YIAINLLKLY YGDDWEGLFE AITGYGLGGS SMALFGRVGG 240
  241 GIYTKAADVG ADLVGKVERN IPEDDPRNPA VIADNVGDNV GDIAGMGSDL FGSYAEASCA 300
  301 ALVVASISSF GINHEFTAMC YPLLISSMGI IVCLVTTLFA TDFFEIKAVK EIEPALKKQL 360
  361 IISTVLMTVG IAIITWIALP SSFTIFNFGT QKVVHNWQLF LCVCVGLWAG LIIGFVTEYY 420
  421 TSNAYSPVQD VADSCRTGAA TNVIFGLALG YKSVIIPIFA IAVSIFVSFS FAAMYGVAVA 480
  481 ALGMLSTIAT GLAIDAYGPI SDNAGGIAEM AGMSHRIRER TDALDAAGNT TAAIGKGFAI 540
  541 GSAALVSLAL FGAFVSRAAI STVDVLTPKV FIGLIVGAML PYWFSAMTMK SVGSAALKMV 600
  601 EEVRRQFNTI PGLMEGTAKP DYATCVKIST DASIKEMIPP GALVMLTPLI VGIFFGVETL 660
  661 SGVLAGSLVS GVQIAISASN TGGAWDNAKK YIEAGASEHA RSLGPKGSEP HKAAVIGDTI 720
  721 GDPLKDTSGP SLNILIKLMA VESLVFAPFF ATHGGLLFKL F