YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7447894, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSCQPLQE SPLLGFPRLR FIHLFVLLLV GLLQISSGIV GQVSKSVREK ALLSCDYKFC  60
   61 SEEQSIHRIY WQKHDKMVLS VISGVPEVWP KYKNRTVYDI ANNYSFSLLG LILSDRGTYT 120
  121 CVVQRYEGGS YVVKHLTTVE LSVRADFPTP NITEYGNPSA DIKRITCFAS GGFPKPRLSW 180
  181 LENGRELNGI NTTISQDPES ELYTISSQLD FNATYDHFID CFIEYGDAHV SQNFTWVKPP 240
  241 EDPPDEKQTV PFAWAGPDAV KAIIIFFIAI TVIAVIAAIA IIIFCITVKF RRCFRRRNEA 300
  301 SRETNKNLYI GPVEAAAEQT V

Type	Start	End	Confidence
Cytoplasmic	1	20	0.66
Transmembrane Helix	21	41	0.73
Non-Cytoplasmic	42	262	0.90
Transmembrane Helix	263	288	0.91
Cytoplasmic	289	321	0.90