YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85100677
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASPVSFL DSLPRPTLDR PFGIHLWPIF SKAFEAVVGY PAEDFRFVPG ETPMSTLKET  60
   61 SIFIVIYYTI IFGGRELMRN REPFKLRTLF LIHNFYLTAI SAILLALFIE QLLPIVVRGG 120
  121 IFHAICHIDG GWTQPLVVLY YLNYLTKYLE LLDTCFLFLK KKPLTFLHCY HHGATALLCY 180
  181 TQLIGSTSVS WVPITLNLTV HVVMYWYYFQ SARGIRIWWK EWITRLQIIQ FIIDLGFVYF 240
  241 ASYTYFTSTY FPWMPNAGKC AGEEFAAFSG IGILSSYLVL FISFYFATYK KDGKRPTGRK 300
  301 SLRRMSQAPL PDPKDIVSAK ASGARPSGAA TARSRKA

Type	Start	End	Confidence
Cytoplasmic	1	88	0.55
Transmembrane Helix	89	109	0.91
Non-Cytoplasmic	110	124	0.70
Transmembrane Helix	125	144	0.59
Cytoplasmic	145	163	0.61
Transmembrane Helix	164	184	0.64
Non-Cytoplasmic	185	189	0.76
Transmembrane Helix	190	209	0.93
Cytoplasmic	210	225	0.92
Transmembrane Helix	226	247	0.89
Non-Cytoplasmic	248	264	0.93
Transmembrane Helix	265	289	0.89
Cytoplasmic	290	337	0.99