YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25286519
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGDELPFES GFEVYAKGTH KSEFDSNLLD PRSDPIWDAI REEAKLEKEP ILSSFLYAGI  60
   61 LAHDCLEQAL GFVLANRLQN PTLLATQLLD IFYGVMMHDK GIQSSIRHDL QAFKDRDPAC 120
  121 LSYSSAILHL KGYHALQAYR VAHKLWNEGR KLLALALQSR ISEVFGIDIH PAARIGEGIL 180
  181 LDHGTGVVIG ETAVIGNGVS ILHGVTLGGT GKETGDRHPK IGEGALLGAC VTILGNISIG 240
  241 AGAMVAAGSL VLKDVPSHSV VAGNPAKLIR VMEEQDPSLA MKHGEFADSY ILLALCICLA 300
  301 RDLVVTVLER ICRCY

Type	Start	End	Confidence
Cytoplasmic	1	224	0.73
Transmembrane Helix	225	247	0.80
Non-Cytoplasmic	248	288	0.84
Transmembrane Helix	289	305	0.61
Cytoplasmic	306	315	0.59