YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|984725
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLILFESM LCKIIIKKVA YTEIDYKAYM EQIEMIQLDR MLDYSQVSGG TGPLVYPAGH  60
   61 VLIYKMMYWL TEGMDHVERG QVFFRYLYLL TLALQMACYY LLHLPPWCVV LACLSKRLHS 120
  121 IYVLRLFNDC FTTLFMVVTV FRGYRGQQVP SAPKLKKSLA LVISATYSMA VSIKMNALLY 180
  181 FPAMMISLFI LNDANVILTL LDLVAMIAWQ VAVAVPFLRQ FPQQYLHCAF NFGRKFMYQW 240
  241 SINWQMMDEE AFNDKRFHLA LLISHLIALT TLFVTRYPRI LPDLWSSLCH PLRKNAVLNA 300
  301 NPAKTIPFVL IASNFIGVLF SRSLHYQFLS WYHWTLPILI FWSGMPFFVG PIWYVLHEWC 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	81	0.68
Transmembrane Helix	82	104	0.81
Non-Cytoplasmic	105	120	0.57
Transmembrane Helix	121	144	0.81
Cytoplasmic	145	158	0.60
Transmembrane Helix	159	181	0.77
Non-Cytoplasmic	182	193	0.46
Transmembrane Helix	194	218	0.76
Cytoplasmic	219	256	0.59
Transmembrane Helix	257	277	0.84
Non-Cytoplasmic	278	302	0.51
Transmembrane Helix	303	326	0.75
Cytoplasmic	327	332	0.41
Transmembrane Helix	333	356	0.88
Non-Cytoplasmic	357	360	0.47