YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2133876, gi\|3...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFLALRKME VYVFILTLSV FVSSEVNVVH EDIVMDGCSD TEKEYISVLD GEEMYHTDFS  60
   61 GKRGEMTLPD FADPFTYPGT YEQSLADYET CKHNLDVAAK AYKSPLEKLD PPQTSIYSRD 120
  121 DVQPDIENKL ICHVTGFFPP PVRVSWTKNN EIVTEGMSVS QYRPNNDGTY NIFSTLRFTP 180
  181 VEGDIYSCSV NHKTLEQPQT KAWEVEVAMP SVGPAVFCGV GLFLGLLGVA AGTFFLIKGN 240
  241 NCN

Type	Start	End	Confidence
Signal Peptide	1	24	0.61
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	212	0.75
Transmembrane Helix	213	237	0.82
Cytoplasmic	238	243	0.64