YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1374686
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFCFLLVFGV NVVLVHLTTG EFSANVQPDV EAMAAAALSG MEMGSGPGSE GYEDADNEKS  60
   61 KTVENARSLT CYCDGSCPDN VSNGTCETRP GGSCSSAVQQ LYDETTGMYE EERTYGCMPP 120
  121 EDNGGFLMCK VAAVPHLHGK NIVCCDKEDF CNRDLYPTYT PKLTTPAPDL PVSSESLHTL 180
  181 AVFGSIIISL SVFMLIVASL CFTYKRREKL RKQPRLINSM CNSQLSPLSQ LVEQSSGSGS 240
  241 GLPLLVQRTI AKQIQMVRLV GKGRYGEVWL AKWRDERVAV KTFFTTEEAS WFRETEIYQT 300
  301 VLMRHDNILG FIAADIKGNG SWTQMLLITD YHEMGSLHDY LSMSVINPQK LQLLAFSLAS 360
  361 GLAHLHDEIF GTPGKPAIAH RDIKSKNILV KRNGQCAIAD FGLAVKYNSE LDVIHIAQNP 420
  421 RVGTRRYMAP EVLSQQLDPK QFEEFKRADM YSVGLVLWEM TRRCYTPVSG TKTTTCEDYA 480
  481 LPYHDVVPSD PTFEDMHAVV CVKGFRPPIP SRWQEDDVLA TVSKIMQECW HPNPTVRLTA 540
  541 LRVKKTLGRL ETDCLIDVPI KIV

Type	Start	End	Confidence
Signal Peptide	1	20	0.80
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	179	0.97
Transmembrane Helix	180	203	0.93
Cytoplasmic	204	563	0.88