YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33864154, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMRRSVRDA IVGFSIVGAV VAFAGTLLWL RGVRLGAKVW SIKVNFPDAT GLAERSPVTY  60
   61 RGILVGTVVK IDVTSQSVRA TLEINKGDLR LSKPVVAKVA SSSLLGGDSQ VALVSLGQPL 120
  121 SANAPLPGSM DCSGSKVLCN GATIVGEPPV SISSVTETLE RILQEVEKQK LVTYLVDSTK 180
  181 QIESTAEDVS KLMSQLKDEV ARAEPMITNL NLATGHINNV VEAFDNPKTV NDLKQTVSYA 240
  241 RSLTKKFDAV GGDVEKLTND PQFMNSLRSV TIGLGEFFNE LYPAQTSGNR P

Type	Start	End	Confidence
Cytoplasmic	1	9	0.77
Transmembrane Helix	10	30	0.85
Non-Cytoplasmic	31	291	0.91