YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33635555, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.46
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAVFSSTLL LTVLLAIGLV FFLRAASKDR TTVVDVHSPR PPLEVLNGMI HWLEERGWKQ  60
   61 DSGDADRQVL RFSGSVASSQ SLAILLSLYA AVGSGCLGLV VRQLYPLLDW WPILLIGLGP 120
  121 LAGLVYSNRA NRIEAVELRL ISASDDEGST LRLRAHRDEL IAMELELSQP LELASDGSLL 180
  181 SSPI

Type	Start	End	Confidence
Signal Peptide	1	25	0.63
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	80	0.63
Transmembrane Helix	81	101	0.71
Cytoplasmic	102	107	0.35
Transmembrane Helix	108	127	0.69
Non-Cytoplasmic	128	184	0.51