YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33634658, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.62
Transmembrane Helix	8	36	0.74
Cytoplasmic	37	40	0.36
Transmembrane Helix	41	59	0.78
Non-Cytoplasmic	60	75	0.61
Transmembrane Helix	76	97	0.85
Cytoplasmic	98	107	0.60
Transmembrane Helix	108	123	0.80
Non-Cytoplasmic	124	126	0.59
Transmembrane Helix	127	147	0.75
Cytoplasmic	148	175	0.76
Transmembrane Helix	176	195	0.81
Non-Cytoplasmic	196	209	0.66
Transmembrane Helix	210	232	0.77
Cytoplasmic	233	244	0.67
Transmembrane Helix	245	269	0.76
Non-Cytoplasmic	270	274	0.70
Transmembrane Helix	275	296	0.74
Cytoplasmic	297	304	0.67
Transmembrane Helix	305	322	0.81
Non-Cytoplasmic	323	332	0.77
Transmembrane Helix	333	355	0.93
Cytoplasmic	356	369	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQFLEPALQ VLAGIGLLFG GGELFVQGSV ALALILGIPE LVIGLTVVAL GTCAPELFVS  60
   61 VSSVLKGSDA LAVSNVVGSN IFNVMVVLGS SALVLPLRVE SRLVRRDVPL LLAVSAAVWG 120
  121 MASAGRVTWQ AGVALLIALV INSVWEIRTA REEPDGMVEA EPEINSKTAN GGWIKACIRL 180
  181 LLGILLLTVG SNQLVKGASD AASLLGVSET VIGLTIVSAG TSMPELFTSL VAALRGRTDL 240
  241 AIGNVVGSSL LNQLLVLSSC ALVSGGAGLQ VDRLIIERDL PVMVLTTLAC MPIFWTRGRI 300
  301 NRLEGGILVG LYVFYVIDQV LPRTLPTWQD GFRLTMLCIV LPIILVMIIL QALLYWRQLR 360
  361 KERITQSVD