YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33634404, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENNNIEVS TSLSSDLSNR GKITIQLEEL LIAGNYDEAK LLLEPSQPVD IADAIGSLPL  60
   61 ILQALAFRLL KKNEAIEVYE YLDPIVQQTL LDRLRSGEVL EIVEKMSPDD RVQLFDELPA 120
  121 KVVRKFLSAL SPGERKVTAE LLGYEPETAG RLMTTEFIDL KEMQTAEEAL SIVRKRAAFT 180
  181 ETIYSLYVTD KERHLTGILS LRDLVTADPT RPIGEVMTKD VVNISTNTNQ EDVARAIQRY 240
  241 DFLALPVVDK EKRLVGIVTV DDLIDVIEQE ATRDIYAAGA VQLGDEDDYF QSGLFTIARR 300
  301 RILWLLILVL ANGLTTKVIA MNDQILKEIV LLAAFIPLLI GTGGNVGAQS STVVIRGLST 360
  361 QKLKSMGAFK VVVKEAITGA LLGILMMLVV FPFAWWQGEG PLIASAVGIS LISITTLAAT 420
  421 AGAILPLLFE RMGLDPALMS SPFITTVTDI AGVFIYLSTA NWLLNSSIL

Type	Start	End	Confidence
Cytoplasmic	1	301	0.95
Transmembrane Helix	302	321	0.94
Non-Cytoplasmic	322	328	0.89
Transmembrane Helix	329	355	0.83
Cytoplasmic	356	375	0.82
Transmembrane Helix	376	395	0.95
Non-Cytoplasmic	396	402	0.82
Transmembrane Helix	403	429	0.86
Cytoplasmic	430	437	0.88
Transmembrane Helix	438	460	0.83
Non-Cytoplasmic	461	469	0.79