YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33866383, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGSRRRTS RRQLKLLAAP WRGPFSALSA VILIGAIGYR LTEGWDWGDC LWMVLITIST  60
   61 IGYGEVETLS PAGRLVTVLI VVGGLIVVQL AIQRVLGLKD AGYFRRLQEF RIHRMLESLH 120
  121 DHVILCGYGR IGQEIAAQLQ RDQIPLVVIE TDPDRRDVAE ANGLQLLQAD ATLDETLLDA 180
  181 GLERCQSLVA ALPGDASNLY VILSARGLNP SCRLIARANS DEAATKLRLA GATVVVSPYV 240
  241 AGGRVMAASA LRPLALNFME LLAGSDFEIE EFQLSRDPLD LMDIRGRSMA ELELGRRSGA 300
  301 LVLAIRDGSE LIANPGGETQ LAPGQLLIVL GSKPQLKRFQ ALLGEAVDSI ETMAS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	39	0.97
Non-Cytoplasmic	40	49	0.73
Transmembrane Helix	50	64	0.47
Cytoplasmic	65	71	0.37
Transmembrane Helix	72	97	0.80
Non-Cytoplasmic	98	355	0.55