YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111435, gi\|602486
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRDRKSMSVY CTPNKPSRTS MSKMFVKGAP EGVIDRCTHI RVGSTKVPMT AGVKQKIMSV  60
   61 IREWGSGSDT LRCLALATHD NPLRREEMHL EDSANFIQYE TNLTFVGCVG MLDPPRIEVA 120
  121 SSVKLCRQAA IRVIMITGDN KGTAVAICRR IGIFGQDEDV TSKAFTGREF DELSPSAQRD 180
  181 ACLNARCFAR VEPSHKSKIV EFLQSFDEIT AMTGDGVNDA PALKKSEIGI AMGSGTAVAK 240
  241 TASEMVLADD NFSTIVAAVE EGRAIYNNMK QFIRYLISSN VGEVVCIFLT AALGFPEALI 300
  301 PVQLLWVNLV TDGLPATALG FNPPDLDIMN KPPRNPKEPL ISGWLFFRYL AIGCYVGAAT 360
  361 VGAAAWWFIA ADGGPRVSFY QLSHFLQCKE DNPDFEGVDC AIFESPYPMT MALSVLVTIE 420
  421 MCNALNSLSE NQSLLRMPPW ENIWLVGSIC LSMSLHFLIL YVEPLPLIFQ ITPLNLTQWL 480
  481 MVLKISLPVI LMDETLKFVA RNYLEPAILE

Type	Start	End	Confidence
Cytoplasmic	1	271	0.91
Transmembrane Helix	272	295	0.76
Non-Cytoplasmic	296	303	0.63
Transmembrane Helix	304	324	0.57
Cytoplasmic	325	344	0.67
Transmembrane Helix	345	370	0.88
Non-Cytoplasmic	371	406	0.70
Transmembrane Helix	407	426	0.59
Cytoplasmic	427	441	0.80
Transmembrane Helix	442	462	0.91
Non-Cytoplasmic	463	475	0.67
Transmembrane Helix	476	491	0.51
Cytoplasmic	492	510	0.56