YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCPR_CAVPO
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSHVDTGA TSTEAVAEEV SLFSMTDMIL LSVLVGFLTY FFLFRKKKEE IPEFTKISTT  60
   61 TSSVKESSFV EKMKKTGRNI IVFYGSQTGT AEEFANRLSK DAHRYGMRGM AADPEEYDLA 120
  121 DLSSLPEIDN SLAVFCMATY GEGDPTDNAQ DFYDWLQETD LDLSGVKYAV FGLGNKTYEH 180
  181 FNSMGKYVDQ RLEQLGAQRI FELGLGDDDG NLEEDFITWR EQFWPAVCEF FGVEATGEES 240
  241 SIRQYELVLH ADTDPAKVYT GEMGRLKSYE NQKPPFDAKN PFLAAVTTNR KLNQGTERHL 300
  301 MHLELDISDS KIRYESGDHV AVYPANDSNL VNQLGKILGA DLDVVMSLKN LDEESNKKHP 360
  361 FPCPTTYRTA LTYYLDITNP PRTNVLYELA QYASEPSEQE QLHKMASSSG EGKELYLTWV 420
  421 VEARRHILAI LQDYPSLRPP IDHLCELLPR LQARYYSIAS SSKVHPNSVH ICAVVVEYET 480
  481 KSGRINKGVA TSWLQAKDPA GENGRRALVP MFVRKSQFRL PFKSTTPVIM VGPGTGVAPF 540
  541 IGFIQERAWL QQQGKEVGET LLYYGCRRSD EDYLYREELA QFHKDGTLTQ LNVAFSREQA 600
  601 QKVYVQHLLK RDQEHLWKLI HEDGAHIYVC GDARNMARDV QNTFCNIAAE LGGMEHTQAV 660
  661 DYVKKLMTKG RYSLDVWS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle