YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|310204
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTWRPSVV SVVGPVGLFL VLLARGCLAE EPPRFIREPK DQIGVSGGVA SFVCQATGDP  60
   61 KPRVTWNKKG KKVNSQRFET IDFDESSGAV LRIQPLRTPR DENVYECVAQ NSVGEITVHA 120
  121 KLTVLREDQL PPGFPNIDMG PQLKVVERTR TATMLCAASG NPDPEITWFK DFLPVDPSAS 180
  181 NGRIKQLRSG ALQIESSEET DQGKYECVAT KQAGVRYSSP ANLYVRVRRV APRFSILPMS 240
  241 HEIMPGGNVN ITCVAVGSPM PYVKWMQGAE DLTPEDDMPV GRNVLELTDV KDSANYPCVA 300
  301 MSSLGVIEAV ADITVKSLPK APGTPVVTEN TATSITVTWD AGNPDPVSYY VLSIIKARMG 360
  361 RIRSKKTSTT TRYSIGGLSP NSEYEIWVSA VNSIGQAPSE SVVTRTGEQA PASAPRNVQA 420
  421 RMLSATTMIV QWEEPVEPNG LIRGYRVYYT MEPEHPVGNW QKHNVDDSLL TTVGSLLEDE 480
  481 TYTVRVLAFT SVGDGPLSDP IQVKTQQGVP GQPMNLRAEA KSETSIGLSW SAPRQESVIK 540
  541 YELLFREGDR GREVGRTFDP TTAFVVEDLK PNTEYAFRLA ARSPQGLGAF TAVVRQRTLQ 600
  601 AISPKNFKVK MIMKTSVLLS WEFPDNYNSP TPYKIQYNGL TLDVDGRTTK KLITHLKPHT 660
  661 FYNFVLTNRG SSLGGLQQTV TARTAFNMLS GKPSVAPKPD NDGSIVVYLP DGQSPVTVQN 720
  721 YFIVMVPLRK SRGGQFPILL PSPEDMDLEE LIQDLSRLQS SLRHSRQLEV PRPYIAARFS 780
  781 ILPAVFHPGN QKQYGGFDNR GLEPGHRYVL FVLAVLQKNE PTFAASPFSD PFQLDNPDPQ 840
  841 PIVDGEEGLI WVIGPVLAVV FIICIVIAIL LYKNKPDSKR KDSEPRTKCL LNNADLAPHH 900
  901 PKDPVEMRRI NFQTPGMLSH PPIPITDMAE HMERLKANDS LKLSQEYESI DPGQQFTWEH 960
  961 SNLEANKPKN RYANVIAYDH SRVILQPLEG IMGSDYINAN YVDGYRRQNA YIATQGPLPE1020
 1021 TFGDFWRMVW EQRSATVVMM TRLEEKSRVK CDQYWPNRGT ETYGFIQVTL LDTMELATFC1080
 1081 VRTFSLHKNG SSEKREVRHF QFTAWPDHGV PEYPTPFLAF LRRVKTCNPP DAGPVVVHCS1140
 1141 AGVGRTGCFI VIDAMLERIR TEKTVDVYGH VTLMRSQRNY MVQTEDQYSF IHEALLEAVG1200
 1201 CGNTEVPARS LYTYIQKLAQ VEPGEHVTGM ELEFKVTAGP QWTGGLKTDS HSCQLTPTHT1260
 1261 Q

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle