YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|542646, gi\|14...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADGSQATS GSPNDSQHDP GKMFIGGLSW QTSPDSLRDY FNKFGEIREC MVMRDPTTKR  60
   61 SRGFGFVTFA DPASVDKVLA QPHHELDSKT IDPKVAFPRR AQPKMVTRTK KIFVGGLSAN 120
  121 TVVEDVKQYF EQYGKVEDAM LMFDKTTNRH RGFGFVTFEI EDVVEKVCEI HFHEINNKMV 180
  181 ECKKAQPKEV MFPPGTRGRA RGLPYTMDAF MLGMGMLGYP NFVATYGRGY PGFAPSYSYQ 240
  241 FPGFPAATTY GPVTAAAVAA ARGSGIPDYG FYTTPGDQRA TLSFADYGSM GPRTAQMLRS 300
  301 EHAASASNSP LHHLPSPDQF KSPVLNSYSA QPNYGTPASP TGTNPGRPGG FPGANSPGPV 360
  361 ADLYGTASQD SGVGNYISAA SPQPGSGFSH GMAGPLIATA FTNGYH

Type	Start	End	Confidence
Cytoplasmic	1	204	0.59
Transmembrane Helix	205	223	0.55
Non-Cytoplasmic	224	245	0.84
Transmembrane Helix	246	261	0.50
Cytoplasmic	262	406	0.52