YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|205612, gi\|321336
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLFLVMFIFS IFGMSNFAYV KHEAGIDDMF NFETFGNSMI CLFQITTSAG WDGLLLPILN  60
   61 RPPDCSLDKE HPGSGFKGDC GNPSVGIFFF VSYIIISFLI VVNMYIAIIL ENFSVATEES 120
  121 ADPLSEDDFE TFYEIWEKFD PDATQFIEYC KLADFADALE HPLRVPKPNT IELIAMDLPM 180
  181 VSGDRIHCLD ILFAFTKRVL GDSGELDILR QQMEERFVAS NPSKVSYEPI TTTLRRKQEE 240
  241 VSAVVLQRAY RGHLARRGFI CKKTTSNKLE NGGTHREKKE STPSTASLPS YDSVTKPEKE 300
  301 KQQRAEEGRR ERAKRQKDLR ESKC

Type	Start	End	Confidence
Cytoplasmic	1	84	0.51
Transmembrane Helix	85	109	0.87
Non-Cytoplasmic	110	324	0.60