YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|424039, gi\|204545
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVTHRVFNVI IILLICFQAT TIMIQNDEQS PQIETAVFWM NSLFRRLFTL ECILKLTAFR  60
   61 CHYFTSAWNV HDFMVVVFSI TGLLLPLSIG QYFVPPSLVQ LLLLSRIIHV LRPGKGPKVF 120
  121 HDLMLPLMLS LPALLNIGLL IFLVMFIYAI FGMYNFAYVK KEAGINDVSK FETFGSSMLC 180
  181 LFQVTTFSGW DGMLDAIFNS QWSDCDPDKI NPGTQVRGDC GSPSVGIFYF VSYILISWLI 240
  241 IVNMYVVLIM EFLSIPSKRK NRTLSEDDFR RFFKVWNRFD PDRTQYIDST KLSDFAAALD 300
  301 PPLFMAKPNK VQLVAMDLPM AAGDRIHCLH ILLAFTKRVM GKDERVEKIL SEIESGFMLA 360
  361 NPFKITYEPI TTTLKRKQEA VSATIIQRAY KSYRLRQSDK KIQDIPEIDD GREDPNSKGV 420
  421 HSGQIEEKAS IQTQI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	25	0.73
Non-Cytoplasmic	26	41	0.57
Transmembrane Helix	42	59	0.57
Cytoplasmic	60	69	0.71
Transmembrane Helix	70	94	0.82
Non-Cytoplasmic	95	132	0.84
Transmembrane Helix	133	154	0.90
Cytoplasmic	155	172	0.74
Transmembrane Helix	173	190	0.83
Non-Cytoplasmic	191	230	0.87
Transmembrane Helix	231	253	0.88
Cytoplasmic	254	435	0.95