YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGSA_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLPNKITL ARIALIPIFM IIMLAPFDWG RLEVGDESIP VAHLAGAILF IIASTTDWVD  60
   61 GYYARKLNLV TNFGKFLDPL ADKLLVSAAL IILVQFDLAP AWMVIVIISR EFAVTGLRLV 120
  121 LAGTGEVVAA NMLGKIKTWA QIIAVSALLL HNLPFELVSF PFADLALWVA VFFTVVSGWE 180
  181 YFSKNWEALK TSN

Type	Start	End	Confidence
Cytoplasmic	1	7	0.89
Transmembrane Helix	8	29	0.90
Non-Cytoplasmic	30	38	0.81
Transmembrane Helix	39	59	0.88
Cytoplasmic	60	83	0.69
Transmembrane Helix	84	106	0.79
Non-Cytoplasmic	107	111	0.51
Transmembrane Helix	112	130	0.59
Cytoplasmic	131	137	0.47
Transmembrane Helix	138	155	0.60
Non-Cytoplasmic	156	161	0.56
Transmembrane Helix	162	182	0.85
Cytoplasmic	183	193	0.75