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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7657873
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGVRKTYDS SYTLSFLLVF FVMFLFHPAL SIHINTLSST ESLTISNNRT LVSPGNVFEL  60
   61 GFFRTTSSSR WYLGIWYKNL PYKTYVWVAN RDNPLSDSIG TLKISNMNLV LLDHSNKSVW 120
  121 STNLTRGNER SPVVAELLEN GNFVIRYSNN NNASGFLWQS FDFPTDTLLP EMKLGYDRKK 180
  181 GLNRFLTAWR NSDDPSSGEI SYQLDTQRGM PEFYLLKNGV RGYRSGPWNG VRFNGIPEDQ 240
  241 KLSYMVYNFT DNSEEAAYTF RMTDKSIYSR LIISNDEYLA RLTFTPTSWE WNLFWTSPEE 300
  301 PECDVYKTCG SYAYCDVNTS PVCNCIQGFK PFNMQQWELR VWAGGCIRRT RLSCNGDGFT 360
  361 RMKNMKLPET TMAIVDRSIG RKECKKRCLS DCNCTAFANA DIRNGGSGCV IWTGELEDIR 420
  421 NYFDDGQDLY VRLAAADLVK KRNANGKTIA LIVGVCVLLL MIMFCLWKRK QKRAKTTATS 480
  481 IVNRQRNQDL LMNGMILSSK RQLPIENKTE ELELPLIELE AVVKATENFS NCNKLGQGGF 540
  541 GIVYKGRLLD GQEIAVKRLS KTSVQGTGEF MNEVRLIARL QHINLVRILG CCIEADEKML 600
  601 VYEYLENLSL DSYLFGNKRS STLNWKDRFN ITNGVARGLL YLHQDSRFRI IHRDMKVSNI 660
  661 LLDKNMTPKI SDFGMARIFA RDETEANTRK VVGTYGYMSP EYAMDGVFSE KSDVFSFGVI 720
  721 VLEIVSGKRN RGFYNLNHEN NLLSYVWSHW TEGRALEIVD PVIVDSLSSL PATFQPKEVL 780
  781 KCIQIGLLCV QERAEHRPTM SSVVWMLGSE ATEIPQPTPP GYSLGRSPYE NNPSSSRHCD 840
  841 DDESWTVNQY TCSDIDAR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle