YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD9_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKGGTKCI KYLLFGFNFI FWLAGIAVLS VGLWLRFDSQ TKSIFEQENN DSSFYTGVYI  60
   61 LIGAGALMML VGFLGCCGAV QESQCMLGLF FSFLLVIFAI EVAAAIWGYS HKEEVIKEVQ 120
  121 KFYEDTYNKL KNKDEPQRET LKAIHIALDC CGLTGVPEQF LTDTCPPKNL IDSLKTRPCP 180
  181 EAIDEIFRSK FHIIGAVGIG IAVVMIFGMV FSMILCCAIR RNRDMV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	35	0.89
Non-Cytoplasmic	36	55	0.92
Transmembrane Helix	56	78	0.91
Cytoplasmic	79	86	0.80
Transmembrane Helix	87	107	0.94
Non-Cytoplasmic	108	192	0.97
Transmembrane Helix	193	217	0.89
Cytoplasmic	218	226	0.88