YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|160685
Protein type: Transmembrane
Type Confidence: 0.71
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFFNFKLNR MICPIFFLYI INVLFTQYFI KCEGNKVTVI SHNNGHNDNL DVNKNGVISQ  60
   61 ENVFDTSESL NLPSNKKVGS DDLNTTTISF TVPDNLENEV KVVSSSESGK GATVSHTKVT 120
  121 SEGLSDTQPN VTQSVSSSTH TPGSLDSTMS TEQHSSVSQS SLPTESSSET LNKATVPEIP 180
  181 IQINSGLLKN YNGVKVTGSC GSYFRVYLVP HILIYALTKY SVIQLESLFN DNARIDVEHK 240
  241 GELQNKCSEG YHFKLVVYIT HNVLNLKWKT YKPNEESKSE DSDVRKYRIP KLERPFTSIQ 300
  301 VYTANSKAGV IETKNYNIRT DIPDTCDAIA TDCFLNGNVN IEKCFQCTLL VQKKDKSHEC 360
  361 FKYVSSEMKK KMNEIKVKAQ DDFNPNEYKL IESIDNILSK IYKKANKPFE ISKDLINLED 420
  421 LDYQFKNELL EYCKLLKKVD TSGTLEEYEL GNAEDIYNNL TRLLKSHSDE NIVTLQGKLR 480
  481 NTAICIKNVD EWILNKRGLT LPSESPSESS SKSDSYLNTF NDKDKNEDKD DMSKNSKEEF 540
  541 KNDDKENSDD QNNNDSNKKD DENNINNGDT NYVYDFDDDD YDNNSYEKDM YESPIKENKN 600
  601 GVIDLEKYGN QIKLKSPYFK NSKYCNYEYC NRWRDKTSCI SQIEVEEQGN CGLCWIFASK 660
  661 LHFETIRCMR GYGHFRSSAL YVANCSKRKP IDRCEEGSNP LEFLRILDEK KFLPLESNYP 720
  721 YSYTSAGNSC PKLPNSWTNL WGDTKLLFNK KVHRYIGNKG FISHETSYFK NNMDLFIDMV 780
  781 KREVQNKGSV IIYIKTQDVI GYDFNGKGVH SMCGDRTPDH AANIIGYGNY INKKGEKRSY 840
  841 WLIRNSWSYY WGDEGNFRVD MLGPKNCLYN FIHTVVFFKL DLGTIHVPKK KSWKKNVYFL 900
  901 RHNTDFMYSL YYNNYEPETS QDFESENDYD NAFVHGQSDE SDETNKEGKN VHNSVEKKIQ 960
  961 ILHILKHIKD SQIKRGLVKY DNINETKDEH TCSRVNSQDA EKYEECKKFC LTKWNECKDH1020
 1021 YSPGYCLTDL YKGEDCNFCY V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle