YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFLLFFRTF PNYPPSDNRV RYPTFTQGFK KKEYVLNMVS SSTTVPRSGV YYFSQGWKLV  60
   61 TLPGIRRFVI LPLLVNIVLM GGAFWWLFTQ LDAWIPSLMS HVPDWLQWLS YLLWPIAVIS 120
  121 VLLVFGYFFS TLANWIAAPF NGLLAEQLEA RLTGATPPDT GILGIMKDVP RIMKREWQKL 180
  181 AWYLPRAIVL LILYFIPGIG QTIAPVLWFL FSAWMLAIQY CDYPFDNHKV PFKTMRAALR 240
  241 TQKVANMQFG ALTSLFTMIP VLNLFIMPVA VCGATAMWVD CWRAKHALWK

Type	Start	End	Confidence
Cytoplasmic	1	67	0.98
Transmembrane Helix	68	89	0.94
Non-Cytoplasmic	90	110	0.91
Transmembrane Helix	111	131	0.92
Cytoplasmic	132	181	0.95
Transmembrane Helix	182	205	0.86
Non-Cytoplasmic	206	255	0.86
Transmembrane Helix	256	279	0.88
Cytoplasmic	280	290	0.83