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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: COL12_MOUSE
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDDFAEEEE VQSFGYKRFG IQEGTQCTKC KNNWALKFSI VLLYILCALL TITVAILGYK  60
   61 VVEKMDNVTD GMETSHQTYD NKLTAVESDL KKLGDQAGKK ALSTNSELST FRSDILDLRQ 120
  121 QLQEITEKTS KNKDTLEKLQ ANGDSLVDRQ SQLKETLQNN SFLITTVNKT LQAYNGYVTN 180
  181 LQQDTSVLQG NLQSQMYSQS VVIMNLNNLN LTQVQQRNLI SNLQQSVDDT SLAIQRIKND 240
  241 FQNLQQVFLQ AKKDTDWLKE KVQSLQTLAA NNSALAKANN DTLEDMNSQL SSFTGQMDNI 300
  301 TTISQANEQS LKDLQDLHKD TENRTAVKFS QLEERFQVFE TDIVNIISNI SYTAHHLRTL 360
  361 TSNLNDVRTT CTDTLTRHTD DLTSLNNTLV NIRLDSISLR MQQDMMRSKL DTEVANLSVV 420
  421 MEEMKLVDSK HGQLIKNFTI LQGPPGPRGP KGDRGSQGPP GPTGNKGQKG EKGEPGPPGP 480
  481 AGERGTIGPV GPPGERGSKG SKGSQGPKGS RGSPGKPGPQ GPSGDPGPPG PPGKDGLPGP 540
  541 QGPPGFQGLQ GTVGEPGVPG PRGLPGLPGV PGMPGPKGPP GPPGPSGAME PLALQNEPTP 600
  601 ASEVNGCPPH WKNFTDKCYY FSLEKEIFED AKLFCEDKSS HLVFINSREE QQWIKKHTVG 660
  661 RESHWIGLTD SEQESEWKWL DGSPVDYKNW KAGQPDNWGS GHGPGEDCAG LIYAGQWNDF 720
  721 QCDEINNFIC EKEREAVPSS IL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle