YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94805, gi\|151066
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKALKTSV FIWEGTDKKG AKVKGELTGQ NPMLVKAHLR KQGINPLKVR KKGISLLGAG  60
   61 KKVKPMDIAL FTRQMATMMG AGVPLLQSFD IIGEGFDNPN MRKLVDEIKQ EVSSGNSLAN 120
  121 SLRKKPQYFD ELYCNLVDAG EQSGALENLL DRVATYKEKT ESLKAKIKKA MTYPIAVIIV 180
  181 ALIVSAILLI KVVPQFQSVF EGFGAELPAF TQMIVNLSEF MQEWWFFIIL AIAIFGFAFK 240
  241 ELHKRSQKFR DTLDRTILKL PIFGGIVYKS AVARYARTLS TTFAAGVPLV DALDSVSGAT 300
  301 GNIVFKNAVS KIKQDVSTGM QLNFSMRTTS VFPNMAIQMT AIGEESGSLD EMLSKVASYY 360
  361 EEEVDNAVDN LTTLMEPMIM AVLGVLVGGL IVAMYLPIFQ LGNVVG

Type	Start	End	Confidence
Cytoplasmic	1	171	0.99
Transmembrane Helix	172	193	0.93
Non-Cytoplasmic	194	220	0.96
Transmembrane Helix	221	240	0.91
Cytoplasmic	241	378	0.90
Transmembrane Helix	379	399	0.94
Non-Cytoplasmic	400	406	0.78