YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|143489, gi\|41...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	111	0.91
Transmembrane Helix	112	133	0.92
Non-Cytoplasmic	134	143	0.74
Transmembrane Helix	144	166	0.88
Cytoplasmic	167	175	0.70
Transmembrane Helix	176	192	0.67
Non-Cytoplasmic	193	205	0.51
Transmembrane Helix	206	223	0.33
Cytoplasmic	224	246	0.60
Transmembrane Helix	247	269	0.87
Non-Cytoplasmic	270	286	0.63
Transmembrane Helix	287	309	0.88
Cytoplasmic	310	327	0.63
Transmembrane Helix	328	350	0.91
Non-Cytoplasmic	351	357	0.66
Transmembrane Helix	358	378	0.77
Cytoplasmic	379	385	0.76
Transmembrane Helix	386	407	0.87
Non-Cytoplasmic	408	428	0.74
Transmembrane Helix	429	450	0.93
Cytoplasmic	451	460	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKETAKRL IELLGGKENI ISAAHCATRL RLVMKDESKI DQAQVEELDG VKGAFSSSGQ  60
   61 YQIIFGTGLV NKVFDAFSKE ADIEREEHVN HQDAAKEKLN PAARFAKTLS NIFVPIIPAI 120
  121 VASGLLMGLL GMINAFHWMS KDSALLQLLD MFSSAAFIFL PILIGVSASK EFGSNPYLGA 180
  181 VIGGIMIHPN LLNPWGLAEE QLITCIFSDL ISLFSATGNC YPCPACGVCD EQGREMDEKS 240
  241 GSTCGDLLVT PFVTVIVTGF VAFIAIGPLG RALGSGITVA LTYVYDHAGF VAGLIFGGTY 300
  301 SLIVLTGVHH SFHAIEAGLI ADIGKNYLLP IWSMANVAQG GAGLAVFFMA KKAKTKEIAL 360
  361 PAAFSAFLGI TEPVIFGVNL RYRKPFIAAM IGGALGGAYV VFTHVAANAY GLTGIPMIAI 420
  421 AAPFGFSNLI HYLIGMAIAA VSAFIAAFVM KINEDEERKK