YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADT1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQALSFLK DFLAGGVAAA ISKTAVAPIE RVKLLLQVQH ASKQISAEKQ YKGIIDCVVR  60
   61 IPKEQGFLSF WRGNLANVIR YFPTQALNFA FKDKYKQIFL GGVDRHKQFW RYFAGNLASG 120
  121 GAAGATSLCF VYPLDFARTR LAADVGKGAA QREFTGLGNC ITKIFKSDGL RGLYQGFNVS 180
  181 VQGIIIYRAA YFGVYDTAKG MLPDPKNVHI IVSWMIAQTV TAVAGLVSYP FDTVRRRMMM 240
  241 QSGRKGADIM YTGTVDCWRK IAKDEGPKAF FKGAWSNVLR GMGGAFVLVL YDEIKKFV

Type	Start	End	Confidence
Cytoplasmic	1	111	0.73
Transmembrane Helix	112	134	0.66
Non-Cytoplasmic	135	209	0.65
Transmembrane Helix	210	231	0.91
Cytoplasmic	232	298	0.82