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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20804680, gi|...
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAISSEAPV GVFAIGPSTA LGRALALRVL LCGSLGRLRH RLAAALRAAL PVAAGWLHPR  60
   61 DNTRGILLAV CAVALLLRVR GRGGGRAGVR ARVQSAYRRK FWRNMMRAAL TYEEWAHAAR 120
  121 MLDRETPRRA TDADLYDEEL VRNKLRELRH RRQEGSLRDI VFCMRADLLR NLGNMCNSEL 180
  181 HKGRLQVPKL IKEYIEEVST QLKMVCNSDS DDLPLEEKLA FMHETRHAFG RTALLLSGGA 240
  241 SLGCFHVGVV KTLVEHKLLP RIISGSSVGS IMCSIVATRS WPELESFFEE WHSLKFFDQM 300
  301 GGIFPVVKRI LTHGAVHDIR HLQTLLRNLT SNLTFQEAYD MTGRILVVTV CSPRKHEPPR 360
  361 CLNYLTSPHV LIWSAVTASC AFPGLFEAQE LMAKDRFGET VPFHAPFLLG LEERVGATTR 420
  421 RWRDGSLESD LPMKQLKELF NVNHFIVSQA NPHIAPLLRL KEIIRAYGGS FAAKLAELAE 480
  481 MEVKHRCNQI LELGFPLGGI AKLFAQDWEG DVTVVMPATL AQYSKIIQNP SYAELQKAAN 540
  541 QGRRCTWEKL SAIRANCAIE LVLDECVALL NHMRRLKRSA ERAAASQGHG PTIRLCPSRR 600
  601 IPSWNLIARE NSSGSLEEEF LISPRTNHHA DGGIAGPSNK NHHVQQNVHD GSDSESESID 660
  661 LNSWTRSGGP LMRTASANKF VSFVQNLEID TEFRTISSRE DRTDVVTPNA NFLVSQAIGR 720
  721 ESVDNSAMPI TPDRSLGNSG YDPHDSNVPR SPFGCSTSIM VSEGDLLQPE KIENGILFNV 780
  781 VKRDTLLTPT GGVELQGTSQ EPDVETIQTE CLDDASDDDD VGLNAGDEAA IDPRANMSSQ 840
  841 NTQHQGSSLE NINLSSSVDC EAETITSKSK GSSLFDIGME IRPTILSTES SMYERSSAKI 900
  901 GLRTVHAEFI SNPGAGKGEV DSGAANKEFS YFSQTADTVI FSESCETGQH HEVNVEALTS 960
  961 YPVSVLEDDR SGGFNLSEIM ATTFIAEADA PISRRDEVEQ HNGSPVETFL DTETVQAGPC1020
 1021 SSTLEGNNTN NSEEMQVVCT SGTN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle