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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|227860
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRVSAPLVL LPAWLLMVAC SPHSLRIAAI LDDPMECSRG ERLSITLAKN RINRAPERLG  60
   61 KAKVEVDIFE LLRDSEYETA ETMCQILPKG VVAVLGPSSS PASSSIISNI CGEKEVPHFK 120
  121 VAPEEFVRFQ LQRFTTLNLH PSNTDISVAV AGILNFFNCT TACLICAKAE CLLNLEKLLR 180
  181 QFLISKDTLS VRMLDDTRDP TPLLKEIRDD KTATIIIHAN ASMSHTILLK AAELGMVSAY 240
  241 YTYIFTNLEF SLQRMDSLVD DRVNILGFSI FNQSHAFFQE FSQSLNQSWQ ENCDHVPFTG 300
  301 PALSSALLFD AVYAVVTAVQ ELNRSQEIGV KPLSCGSAQI WQHGTSLMNY LRMVELEGLT 360
  361 GHIEFNSKGQ RSNYALKILQ FTRNGFRQIG QWHVAEGLSM DSRLYASNIS DSLFNTTLVV 420
  421 TTILENPYLM LKGNHQDMEG NDRYEGFCVD MLKELAEILR FNYKIRLVGD GVYGVPEANG 480
  481 TWTGMVGELI ARKADLAVAG LTITAEREKV IDFSKPFMTL GISILYRVHM GRRPGYFSSL 540
  541 DPFSPGVWLF MLLAYLAVSC VLFLVARLTP YEWYSPHPCA QGRCNLLVNQ YSLGNSLWFP 600
  601 VGGFMQQGST IAPRALSTRC VSGVWWAFTL IIISSYTANL AAFLTVQRME VPIESVDDLA 660
  661 DQTAIEYGTI HGGSSMTFFQ NSRYQTYQRM WNYMYSKQPS VFVKSTEEGI ARVLNSNYAF 720
  721 LLESTMNEYY RQRNCNLTQI GGLLDTKGYG IGMPVGSVFR DEFDLAILQL QENNRLEILK 780
  781 RKWWEGGKCP KEEDHRAKGL GMENIGGIFV VLICGLIVAI FMAMLEFLWT LRHSEASEVS 840
  841 VCQEMMTELR SIILCQDNIH PRRRRSGGLP PQPPVLEERR PRGTATLSNG KLCGAGEPDQ 900
  901 LAQRLAQEAA LVARGWHAHP RVPGVPALPG PAGSTVASAQ RGEPGVGQDH QQQRA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle