YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|539437, gi\|408505
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKYDLLYLT AHVTLVCCLI GIHGSILPGS HGIIECEHFD EKMCNTTQQC ETRIEHCKME  60
   61 ADKFPSCYVL WSVNETTGIL RIKMKGCFTD MHECNQTECV TSAEPRQGNI HFCCCKGSRC 120
  121 NSNQKYIKST TEATTQVPKE KTQDGSNLIY IYIGTSVFSV LMVIVGMGLL LYRRRKQAHF 180
  181 NEIPTHEAEI TNSSPLLSNR PIQLLEQKAS GRFGDVWQAK LNNQDVAVKI FRMQEKESWT 240
  241 TEHDIYKLPR MRHPNILEFL GVEKHMDKPE YWLISTYQHN GSLCDYLKSH TISWPELCRI 300
  301 AESMANGLAH LHEEIPASKT DGLKPSIAHR DFKSKNVLLK SDLTACIADF GLAMIFQPGK 360
  361 PCGDTHGQVG TRRYMAPEVL EGAINFNRDA FLRIDVYACG LVLWEMVSRC DFAGPVGEFQ 420
  421 LPFEAELGLR PSLDEVQESV VMKKLRPRLL NSWRAHPGLN VFCDTMEECW DHDAEARLSS 480
  481 SCVMERFAQL NKYPSTQLLI KNHTNIDDAK ESTNCL

Type	Start	End	Confidence
Cytoplasmic	1	7	0.45
Transmembrane Helix	8	27	0.63
Non-Cytoplasmic	28	147	0.57
Transmembrane Helix	148	172	0.88
Cytoplasmic	173	516	0.54