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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40216161
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDTRSLSLAV TADFHLKINI PVEMWIAYAL VVHVLLLGSI FVIYFRSPVI TGLTPQKHLL  60
   61 YYGLEPPANR LVLIVTDGFR ADSFFEENCR YVPNLRKIFL REGVVGVSRT RVPTETRPGH 120
  121 ITLIAGLYED PSAVLRGWKS NPIDFDTVFN RSSQTYAWGA NDVLNVFSHV SNGGEINLRF 180
  181 YNHDLDFSPG YDAYEEDEWV FKRVKLLLQQ KREALQRAQN VVFFLHLLGL DTAGHVHKPG 240
  241 APKFRRTLEK TEKGVYAIYQ EFERVFPDKR TAYLLTADHG MTDSGAHGAG SPHETDTPFM 300
  301 LWGAGASRVV PKPGGRTFMP NNEGPAMPLH ELEQAQLTPL MSALLGLAPP MNNFGKLPLG 360
  361 YLNVSKEYEA MAAHINALQL LEQYVALQKQ HKKGFFADIL LEYDVLNAEA IKRYKDTIVQ 420
  421 LQKKREYSLC IDKSQVIMSQ ALEGIDYYHG YYRRVLLLST TSTFLGWMFY IYRLLSRNRA 480
  481 SKVELVLERS NKIVRVSIVS SVIVLVICLL SQGTPLDISF YLLLPYFVWL KALQPWNINF 540
  541 SSSPASAYSV PALQTSMWQL VLLIACAELM VFTFFERRLI ALCFCVFACY NSWENFQWKS 600
  601 RDFFSWLALV LILSCFPLLP LSVGYQNGYL LGAGVIVIFT NSFWNSKSRL CYRNHTKYSN 660
  661 ALILLQTILC AYLHSNGINI PIPLKLASWL YLVYAFASIL LSKESRLDLR LAQIGFNLGS 720
  721 LYATLCTSYE TVFVQLLTIE LNISLRAQSA RAERSVLRLA FTLLLYTFFS LFGSGNIASI 780
  781 SSFDPNIARC YLSHFAPFVI MGLVLLKLLV PVVLIMSVIY ANSEFVRQHE EQIFICLLLI 840
  841 CDVMGLNFLF LVRNQGSWLD IGTSISHFVI MEVTTLVMLV IFYTAKQLLR VIPWEEIDFK 900
  901 MLPLRLIHWD LISDKHH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle