YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40215939
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRKMNYNPNP GMRNRKWENS SAAGRPRPPK RVSDVNAMGP SAPMMGGGAT FMAPPTGPGI  60
   61 LDPNMYGAPA PAPVNSYGFD PNLGQPSQHI QQPPQQQPGY GYGAPPPQQA AGPPTYGIGA 120
  121 PQPVAPPTGQ YPQFAMFQQP IVQDMAMQYG QKLADQGKQI MENQFEKWVP VAKLKYYFAV 180
  181 DNAYVGRKLR LLFFPYMHKD WSLRYDQEHP VQPRYDVNAP DLYLPTMGYI TYVIVAGLLL 240
  241 GMQKRFSPEQ LGIQASSAMA YSIFELVIYS LALYVMNVKT SLKTLDLLAF TGYKYVNIVV 300
  301 CLMVSTLFFK SGYYIALAYT SFSFGFFMLR TLRTKLLQDN SPAAPSGAIN YDPYGNPQQF 360
  361 DYSGGKKRKL YFLFMIVAGQ ALFAFLLSKH LYLPEAEVLT APKTF

Type	Start	End	Confidence
Cytoplasmic	1	221	0.51
Transmembrane Helix	222	242	0.73
Non-Cytoplasmic	243	254	0.54
Transmembrane Helix	255	278	0.81
Cytoplasmic	279	289	0.52
Transmembrane Helix	290	309	0.65
Non-Cytoplasmic	310	312	0.66
Transmembrane Helix	313	332	0.83
Cytoplasmic	333	369	0.93
Transmembrane Helix	370	392	0.89
Non-Cytoplasmic	393	405	0.91