YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18076148
Protein type:	Transmembrane
Type Confidence:	0.50
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGNKFCCDF RYLLILAAVA FIYTQMRLFA TQSEYADRLA AAIEAENHCT SQTRLLIDQI  60
   61 SLQQGRIVAL EEQMKRQDQE CRQLRALVQD LESKGIKKLI GNVQMPVAAV VVMACNRADY 120
  121 LEKTIKSILK YQISVASKYP LFISQDGSHP DVRKLALSYD QLTYMQHLDF EPVHTERPGE 180
  181 LIAYYKIARH YKWALDQLFY KHNFSRVIIL EDDMEIAPDF FDFFEAGATL LDRDKSIMAI 240
  241 SSWNDNGQMQ FVQDPYALYR SDFFPGLGWM LSKSTWDELS PKWPKAYWDD WLRLKENHRG 300
  301 RQFIRPEVCR TYNFGEHGSS LGQFFKQYLE PIKLNDVQVD WKSMDLSYLL EDNYVKHFGD 360
  361 LVKKAKPIHG ADAVLKAFNI DGDVRIQYRD QLDFENIARQ FGIFEEWKDG VPRAAYKGIV 420
  421 VFRYQTSRRV FLVGHDSLQQ LGIEDT

Type	Start	End	Confidence
Cytoplasmic	1	9	0.42
Transmembrane Helix	10	26	0.47
Non-Cytoplasmic	27	446	0.99