YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18076140
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGNKFCFDL RYLLVVAALA FIYIQMRLFA TQSEYVDRLA AAIEAENHCT SQTRLLIDKI  60
   61 SQQQGRVVAL EEQMKHQDQE CRQLRALVQD LESKGIKKLI GDVQMPVAAV VVMACSRTDY 120
  121 LERTIKSILK YQTSVASKYP LFISQDGSNP DVRKLALSYG QLTYMQHLDY EPVHTERPGE 180
  181 LVAYYKIARH YKWALDQLFH KHNFSRVIIL EDDMEIAADF FDYFEAGATL LDRDKSIMAI 240
  241 SSWNDNGQRQ FVQDPDALYR SDFFPGLGWM LSKSTWSELS PKWPKAYWDD WLRLKENHRG 300
  301 RQFIRPEVCR TYNFGEHGSS LGQFFKQYLE PIKLNDVQVD WKSMDLSYLL EDNYVKHFGD 360
  361 LVKKAKPIHG ADAVLKAFNI DGDVRIQYRD QLDFEDIARQ FGIFEEWKDG VPRAAYKGIV 420
  421 VFRFQTSRRV FLVSPDSLRQ LGVEDT

Type	Start	End	Confidence
Cytoplasmic	1	7	0.67
Transmembrane Helix	8	26	0.64
Non-Cytoplasmic	27	446	0.99