YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46518253, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGGRMQVS PPSKKSETDN IKRVPCETPP FTVGELKKAI PPHCFKRSIP RSFSYLIWDI  60
   61 IIASCFYYVA TTYFPLLPHP LSYFAWPLYW ACQGCVLTGV WVIAHECGHH AFSDYQWLDD 120
  121 TVGLIFHSFL LVPYFSWKYS HRRHHSNTGS LERDEVFVPK KKSDIKWYGK YLNNPLGRTV 180
  181 MLTVQFTLGW PLYLAFNVSG RPYDGGFACH FHPNAPIYND RERLQIYISD AGILAVCYGL 240
  241 YRYAAVQGVA SMVCFYGVPL LIVNGFLVLI TYLQHTHPSL PHYDSSEWDW LRGALATVDR 300
  301 DYGILNKVFH NITDTHVAHH LFSTMPHYHA MEATKAIKPI LGEYYQFDGT PVVKAMWREA 360
  361 KECIYVEPDR QGEKKGVFWY NNKL

Type	Start	End	Confidence
Cytoplasmic	1	54	0.90
Transmembrane Helix	55	77	0.89
Non-Cytoplasmic	78	85	0.75
Transmembrane Helix	86	105	0.65
Cytoplasmic	106	175	0.61
Transmembrane Helix	176	196	0.60
Non-Cytoplasmic	197	225	0.55
Transmembrane Helix	226	245	0.61
Cytoplasmic	246	251	0.46
Transmembrane Helix	252	273	0.89
Non-Cytoplasmic	274	384	0.54