YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46140205, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.79
Transmembrane Helix	99	121	0.81
Non-Cytoplasmic	122	146	0.76
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	177	0.84
Transmembrane Helix	178	199	0.85
Non-Cytoplasmic	200	240	0.88
Transmembrane Helix	241	258	0.93
Cytoplasmic	259	262	0.64
Transmembrane Helix	263	280	0.48
Non-Cytoplasmic	281	324	0.47
Transmembrane Helix	325	347	0.64
Cytoplasmic	348	366	0.53
Transmembrane Helix	367	389	0.83
Non-Cytoplasmic	390	401	0.48
Transmembrane Helix	402	423	0.90
Cytoplasmic	424	428	0.43
Transmembrane Helix	429	451	0.83
Non-Cytoplasmic	452	459	0.50
Transmembrane Helix	460	494	0.71
Cytoplasmic	495	584	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWMENANHK IAASAVGRWF QLDGSGHPRE RKGSLFFTEI RAGLATFFAM AYIIAVNSSI  60
   61 VSESGGTCVC PAYKDGACVP DDAYQLCVAE VKRDAVTATA AISALATFFM GLFANLPVGL 120
  121 APGMGLNAYF TYTVVGPGGS GPVPYELALT AIFIEGFIFF GLALFGMRQW LARAIPRCIK 180
  181 LATSVGIGLF LTLIGLTYSE GIGLIVGSTS TPLELAGCEA SYRDPATGLC PSSQKMRNPS 240
  241 MWIGIFCGGI LTVLLMMYRV KGAVIAGILL VSIISWPRGT DVTYFPYDTL GDDRFDFFKK 300
  301 VVDFHQIKRT LNVLQFDISG HSGQFGLALI TFLYVDILDC TGTLYGMARF ADLVDPVTQD 360
  361 FEGSSIAYMV DALSISIGAV LGVPPVTAFV ESGAGISEGG KTGITAMVAG ICFFISIFFA 420
  421 PIFASIPPWA TGCVLILVGS MMVGAVTEIN WKYMGDAVPA FLTIAIMPFA YSIADGLIAG 480
  481 ICTYMVLNTV VLLVKIISGG RIVPPNYEER DGWTWRIPGG FLPPWMNRLA HGKKDFWRED 540
  541 NPPHNTNNET VVSDTAAPKE NGSDHGGSEG GKVAETTLPR EKET